From cafb7d0b4657e409220c36584d9e0b74ac676deb Mon Sep 17 00:00:00 2001 From: "Documenter.jl" Date: Thu, 12 Sep 2024 05:30:30 +0000 Subject: [PATCH] build based on 1e46702 --- dev/.documenter-siteinfo.json | 2 +- dev/LEQ/index.html | 2 +- dev/asp/index.html | 2 +- dev/getting_started_with_julia/index.html | 2 +- dev/index.html | 2 +- dev/jacobi_2D/index.html | 2 +- dev/jacobi_method/index.html | 2 +- dev/julia_async/index.html | 2 +- dev/julia_basics/index.html | 2 +- dev/julia_distributed.ipynb | 8 ++++---- dev/julia_distributed/index.html | 2 +- dev/julia_distributed_src/index.html | 6 +++--- dev/julia_intro/index.html | 2 +- dev/julia_jacobi/index.html | 2 +- dev/julia_mpi/index.html | 2 +- dev/julia_tutorial/index.html | 2 +- dev/matrix_matrix/index.html | 2 +- dev/mpi_collectives/index.html | 2 +- dev/mpi_tutorial/index.html | 2 +- dev/notebook-hello/index.html | 2 +- dev/pdes/index.html | 2 +- dev/solutions/index.html | 2 +- dev/solutions_for_all_notebooks/index.html | 2 +- dev/tsp/index.html | 2 +- 24 files changed, 29 insertions(+), 29 deletions(-) diff --git a/dev/.documenter-siteinfo.json b/dev/.documenter-siteinfo.json index 56f2561..d22c51d 100644 --- a/dev/.documenter-siteinfo.json +++ b/dev/.documenter-siteinfo.json @@ -1 +1 @@ -{"documenter":{"julia_version":"1.10.5","generation_timestamp":"2024-09-11T08:58:10","documenter_version":"1.7.0"}} \ No newline at end of file +{"documenter":{"julia_version":"1.10.5","generation_timestamp":"2024-09-12T05:30:23","documenter_version":"1.7.0"}} \ No newline at end of file diff --git a/dev/LEQ/index.html b/dev/LEQ/index.html index 31f95c0..bb333cf 100644 --- a/dev/LEQ/index.html +++ b/dev/LEQ/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/asp/index.html b/dev/asp/index.html index 1289864..6ea7507 100644 --- a/dev/asp/index.html +++ b/dev/asp/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/getting_started_with_julia/index.html b/dev/getting_started_with_julia/index.html index 09d982f..73ec815 100644 --- a/dev/getting_started_with_julia/index.html +++ b/dev/getting_started_with_julia/index.html @@ -15,4 +15,4 @@ DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"

Copy the contents of previous code block into a file called Project.toml and place it in an empty folder named newproject. It is important that the file is named Project.toml. You can create a new folder from the REPL with

julia> mkdir("newproject")

To install all the packages registered in this file you need to activate the folder containing your Project.toml file

(@v1.10) pkg> activate newproject

and then instantiating it

(newproject) pkg> instantiate

The instantiate command will download and install all listed packages and their dependencies in just one click.

Getting help in package mode

You can get help about a particular package operator by writing help in front of it

(@v1.10) pkg> help activate

You can get an overview of all package commands by typing help alone

(@v1.10) pkg> help

Package operations in Julia code

In some situations it is required to use package commands in Julia code, e.g., to automatize installation and deployment of Julia applications. This can be done using the Pkg package. For instance

julia> using Pkg
 julia> Pkg.status()

is equivalent to calling status in package mode.

(@v1.10) pkg> status

Creating you own package

In many situations, it is useful to create your own package, for instance, when working with a large code base, when you want to reduce compilation latency using Revise.jl, or if you want to eventually register your package and share it with others.

The simplest way of generating a package (called MyPackage) is as follows. Open Julia, go to package mode, and type

(@v1.10) pkg> generate MyPackage

This will crate a minimal package consisting of a new folder MyPackage with two files:

Tip

This approach only generates a very minimal package. To create a more sophisticated package skeleton (including unit testing, code coverage, readme file, licence, etc.) use PkgTemplates.jl or BestieTemplate.jl. The later one is developed in Amsterdam at the Netherlands eScience Center.

You can add dependencies to the package by activating the MyPackage folder in package mode and adding new dependencies as always:

(@v1.10) pkg> activate MyPackage
 (MyPackage) pkg> add MPI

This will add MPI to your package dependencies.

Using your own package

To use your package you first need to add it to a package environment of your choice. This is done by changing to package mode and typing develop followed by the path to the folder containing the package. For instance:

(@v1.10) pkg> develop MyPackage
Note

You do not need to "develop" your package if you activated the package folder MyPackage.

Now, we can go back to standard Julia mode and use it as any other package:

using MyPackage
-MyPackage.greet()

Here, we just called the example function defined in MyPackage/src/MyPackage.jl.

Conclusion

We have learned the basics of how to work with Julia, including how to run serial and parallel code, and how to manage, create, and use Julia packages. This knowledge will allow you to follow the course effectively! If you want to further dig into the topics we have covered here, you can take a look at the following links:

+MyPackage.greet()

Here, we just called the example function defined in MyPackage/src/MyPackage.jl.

Conclusion

We have learned the basics of how to work with Julia, including how to run serial and parallel code, and how to manage, create, and use Julia packages. This knowledge will allow you to follow the course effectively! If you want to further dig into the topics we have covered here, you can take a look at the following links:

diff --git a/dev/index.html b/dev/index.html index 6e3cd17..a99fded 100644 --- a/dev/index.html +++ b/dev/index.html @@ -2,4 +2,4 @@ Home · XM_40017

Programming Large-Scale Parallel Systems (XM_40017)

Welcome to the interactive lecture notes of the Programming Large-Scale Parallel Systems course at VU Amsterdam!

What

This page contains part of the course material of the Programming Large-Scale Parallel Systems course at VU Amsterdam. We provide several lecture notes in jupyter notebook format, which will help you to learn how to design, analyze, and program parallel algorithms on multi-node computing systems. Further information about the course is found in the study guide (click here) and our Canvas page (for registered students).

Note

Material will be added incrementally to the website as the course advances.

Warning

This page will eventually contain only a part of the course material. The rest will be available on Canvas. In particular, the material in this public webpage does not fully cover all topics in the final exam.

How to use this page

You have two main ways of studying the notebooks:

  • Download the notebooks and run them locally on your computer (recommended). At each notebook page you will find a green box with links to download the notebook.
  • You also have the static version of the notebooks displayed in this webpage for quick reference.

How to run the notebooks locally

To run a notebook locally follow these steps:

  • Install Julia (if not done already). More information in Getting started.
  • Download the notebook.
  • Launch Julia. More information in Getting started.
  • Execute these commands in the Julia command line:
julia> using Pkg
 julia> Pkg.add("IJulia")
 julia> using IJulia
-julia> notebook()
  • These commands will open a jupyter in your web browser. Navigate in jupyter to the notebook file you have downloaded and open it.

Authors

This material is created by Francesc Verdugo with the help of Gelieza Kötterheinrich. Part of the notebooks are based on the course slides by Henri Bal.

License

All material on this page that is original to this course may be used under a CC BY 4.0 license.

Acknowledgment

This page was created with the support of the Faculty of Science of Vrije Universiteit Amsterdam in the framework of the project "Interactive lecture notes and exercises for the Programming Large-Scale Parallel Systems course" funded by the "Innovation budget BETA 2023 Studievoorschotmiddelen (SVM) towards Activated Blended Learning".

+julia> notebook()

Authors

This material is created by Francesc Verdugo with the help of Gelieza Kötterheinrich. Part of the notebooks are based on the course slides by Henri Bal.

License

All material on this page that is original to this course may be used under a CC BY 4.0 license.

Acknowledgment

This page was created with the support of the Faculty of Science of Vrije Universiteit Amsterdam in the framework of the project "Interactive lecture notes and exercises for the Programming Large-Scale Parallel Systems course" funded by the "Innovation budget BETA 2023 Studievoorschotmiddelen (SVM) towards Activated Blended Learning".

diff --git a/dev/jacobi_2D/index.html b/dev/jacobi_2D/index.html index cce62a6..5e22ced 100644 --- a/dev/jacobi_2D/index.html +++ b/dev/jacobi_2D/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/jacobi_method/index.html b/dev/jacobi_method/index.html index 267a145..4a10da9 100644 --- a/dev/jacobi_method/index.html +++ b/dev/jacobi_method/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/julia_async/index.html b/dev/julia_async/index.html index 5d20dc2..77c0708 100644 --- a/dev/julia_async/index.html +++ b/dev/julia_async/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/julia_basics/index.html b/dev/julia_basics/index.html index 7123eee..bd29f3c 100644 --- a/dev/julia_basics/index.html +++ b/dev/julia_basics/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/julia_distributed.ipynb b/dev/julia_distributed.ipynb index 7dd1269..0925938 100644 --- a/dev/julia_distributed.ipynb +++ b/dev/julia_distributed.ipynb @@ -725,9 +725,9 @@ "id": "b8b411f1", "metadata": {}, "source": [ - "### Remote channels are not iterable\n", + "### Remote channels are also iterable\n", "\n", - "One main difference with respect to conventional channels is that remote channels cannot be iterated. Let's repeat the example above." + "As with conventional channels, remote channels can be iterated. Let's repeat the example above." ] }, { @@ -761,7 +761,7 @@ "id": "4bb35283", "metadata": {}, "source": [ - "Now, try to iterate over the channel in a for loop. It will result in an error since channels are not iterable." + "Now, try to iterate over the channel in a for loop." ] }, { @@ -781,7 +781,7 @@ "id": "8eaea2fa", "metadata": {}, "source": [ - "If we want to take values form a remote channel and stop automatically when the channel is closed, we can combine a while loop and a try-catch statement. This works since `take!` raises an error if the channel is closed, which will execute the `catch` block and breaks the loop." + "As an alternative method (or if you are using an older version of Julia): if we want to take values form a remote channel and stop automatically when the channel is closed, we can combine a while loop and a try-catch statement. This works since `take!` raises an error if the channel is closed, which will execute the `catch` block and breaks the loop." ] }, { diff --git a/dev/julia_distributed/index.html b/dev/julia_distributed/index.html index 97b0605..5d4b4c3 100644 --- a/dev/julia_distributed/index.html +++ b/dev/julia_distributed/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/julia_distributed_src/index.html b/dev/julia_distributed_src/index.html index 0614c94..c55e207 100644 --- a/dev/julia_distributed_src/index.html +++ b/dev/julia_distributed_src/index.html @@ -8387,7 +8387,7 @@ bottlenecks. Being aware of the data we are moving when using functions such as
@@ -8432,7 +8432,7 @@ bottlenecks. Being aware of the data we are moving when using functions such as
@@ -8459,7 +8459,7 @@ bottlenecks. Being aware of the data we are moving when using functions such as
diff --git a/dev/julia_intro/index.html b/dev/julia_intro/index.html index f0d8f2e..1274fdf 100644 --- a/dev/julia_intro/index.html +++ b/dev/julia_intro/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/julia_jacobi/index.html b/dev/julia_jacobi/index.html index e44d136..28d474e 100644 --- a/dev/julia_jacobi/index.html +++ b/dev/julia_jacobi/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/julia_mpi/index.html b/dev/julia_mpi/index.html index b658556..4dbab50 100644 --- a/dev/julia_mpi/index.html +++ b/dev/julia_mpi/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/julia_tutorial/index.html b/dev/julia_tutorial/index.html index b059119..a7d20ab 100644 --- a/dev/julia_tutorial/index.html +++ b/dev/julia_tutorial/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/matrix_matrix/index.html b/dev/matrix_matrix/index.html index 3c460ca..1fc0f7d 100644 --- a/dev/matrix_matrix/index.html +++ b/dev/matrix_matrix/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/mpi_collectives/index.html b/dev/mpi_collectives/index.html index 698eb61..4041584 100644 --- a/dev/mpi_collectives/index.html +++ b/dev/mpi_collectives/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/mpi_tutorial/index.html b/dev/mpi_tutorial/index.html index 2724d72..45f2f36 100644 --- a/dev/mpi_tutorial/index.html +++ b/dev/mpi_tutorial/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/notebook-hello/index.html b/dev/notebook-hello/index.html index 5fdb8d8..07375b1 100644 --- a/dev/notebook-hello/index.html +++ b/dev/notebook-hello/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/pdes/index.html b/dev/pdes/index.html index 910fbed..5a9dc9f 100644 --- a/dev/pdes/index.html +++ b/dev/pdes/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/solutions/index.html b/dev/solutions/index.html index dab6c3b..d848c03 100644 --- a/dev/solutions/index.html +++ b/dev/solutions/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/solutions_for_all_notebooks/index.html b/dev/solutions_for_all_notebooks/index.html index 7156870..22f9c1b 100644 --- a/dev/solutions_for_all_notebooks/index.html +++ b/dev/solutions_for_all_notebooks/index.html @@ -172,4 +172,4 @@ end

« Jacobi method

Powered by Documenter.jl and the Julia Programming Language.

+end diff --git a/dev/tsp/index.html b/dev/tsp/index.html index fbc1977..8697ae0 100644 --- a/dev/tsp/index.html +++ b/dev/tsp/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - +