From f325dd12529969d4945bfb45f8e338f882330d7b Mon Sep 17 00:00:00 2001 From: "Documenter.jl" Date: Tue, 15 Aug 2023 09:46:51 +0000 Subject: [PATCH] build based on 9a3c8db --- dev/getting_started_with_julia/index.html | 2 +- dev/index.html | 2 +- dev/notebook-html/jacobi_method.html | 35 ++++------------------ dev/notebooks/jacobi_2D/index.html | 2 +- dev/notebooks/jacobi_method.ipynb | 32 +++++--------------- dev/notebooks/jacobi_method/index.html | 2 +- dev/notebooks/julia_async/index.html | 2 +- dev/notebooks/julia_basics/index.html | 2 +- dev/notebooks/julia_distributed/index.html | 2 +- dev/notebooks/julia_intro/index.html | 2 +- dev/notebooks/julia_jacobi/index.html | 2 +- dev/notebooks/julia_tutorial/index.html | 2 +- dev/notebooks/matrix_matrix/index.html | 2 +- dev/notebooks/mpi_tutorial/index.html | 2 +- dev/notebooks/notebook-hello/index.html | 2 +- dev/notebooks/solutions/index.html | 2 +- dev/notebooks/tsp/index.html | 2 +- dev/search/index.html | 2 +- 18 files changed, 28 insertions(+), 71 deletions(-) diff --git a/dev/getting_started_with_julia/index.html b/dev/getting_started_with_julia/index.html index f8b8b42..c921ced 100644 --- a/dev/getting_started_with_julia/index.html +++ b/dev/getting_started_with_julia/index.html @@ -14,4 +14,4 @@ julia> DataFrame(a=[1,2],b=[3,4])

You should get an error or a BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"

Copy the contents of previous code block into a file called Project.toml and place it in an empty folder named newproject. It is important that the file is named Project.toml. You can create a new folder from the REPL with

julia> mkdir("newproject")

To install all the packages registered in this file you need to activate the folder containing your Project.toml file

(@v1.8) pkg> activate newproject

and then instantiating it

(newproject) pkg> instantiate

The instantiate command will download and install all listed packages and their dependencies in just one click.

Getting help in package mode

You can get help about a particular package operator by writing help in front of it

(@v1.8) pkg> help activate

You can get an overview of all package commands by typing help alone

(@v1.8) pkg> help

Package operations in Julia code

In some situations it is required to use package commands in Julia code, e.g., to automatize installation and deployment of Julia applications. This can be done using the Pkg package. For instance

julia> using Pkg
-julia> Pkg.status()

is equivalent to calling status in package mode.

(@v1.8) pkg> status

Conclusion

We have learned the basics of how to work with Julia. If you want to further dig into the topics we have covered here, you can take a look at the following links:

+julia> Pkg.status()

is equivalent to calling status in package mode.

(@v1.8) pkg> status

Conclusion

We have learned the basics of how to work with Julia. If you want to further dig into the topics we have covered here, you can take a look at the following links:

diff --git a/dev/index.html b/dev/index.html index 5a79e4a..2ca59c0 100644 --- a/dev/index.html +++ b/dev/index.html @@ -2,4 +2,4 @@ Home · XM_40017
Edit on GitHub

Programming Large-Scale Parallel Systems (XM_40017)

Welcome to the interactive lecture notes of the Programming Large-Scale Parallel Systems course at VU Amsterdam!

What

This page contains part of the course material of the Programming Large-Scale Parallel Systems course at VU Amsterdam. We provide several lecture notes in jupyter notebook format, which will help you to learn how to design, analyze, and program parallel algorithms on multi-node computing systems. Further information about the course is found in the study guide (click here) and our Canvas page (for registered students).

Note

This page contains only a part of the course material. The rest is available on Canvas. In particular, the lecture notes in this public webpage do not fully cover all topics in the final exam.

How to use this page

You have two main ways of running the notebooks:

  • Download the notebooks and run them locally on your computer (recommended)
  • Run the notebooks on the cloud via mybinder.org (high startup time).

You also have the static version of the notebooks displayed in this webpage for quick reference. At each notebook page you will find a green box with links to download the notebook or to open in on mybinder.

How to run the notebooks locally

To run a notebook locally follow these steps:

  • Install Julia (if not done already). More information in Getting started.
  • Download the notebook.
  • Launch Julia. More information in Getting started.
  • Execute these commands in the Julia command line:
julia> using Pkg
 julia> Pkg.add("IJulia")
 julia> using IJulia
-julia> notebook()
  • These commands will open a jupyter in your web browser. Navigate in jupyter to the notebook file you have downloaded and open it.

Authors

This material is created by Francesc Verdugo with the help of Gelieza Kötterheinrich. Part of the notebooks are based on the course slides by Henri Bal.

License

All material on this page that is original to this course may be used under a CC BY 4.0 license.

Acknowledgment

This page was created with the support of the Faculty of Science of Vrije Universiteit Amsterdam in the framework of the project "Interactive lecture notes and exercises for the Programming Large-Scale Parallel Systems course" funded by the "Innovation budget BETA 2023 Studievoorschotmiddelen (SVM) towards Activated Blended Learning".

+julia> notebook()

Authors

This material is created by Francesc Verdugo with the help of Gelieza Kötterheinrich. Part of the notebooks are based on the course slides by Henri Bal.

License

All material on this page that is original to this course may be used under a CC BY 4.0 license.

Acknowledgment

This page was created with the support of the Faculty of Science of Vrije Universiteit Amsterdam in the framework of the project "Interactive lecture notes and exercises for the Programming Large-Scale Parallel Systems course" funded by the "Innovation budget BETA 2023 Studievoorschotmiddelen (SVM) towards Activated Blended Learning".

diff --git a/dev/notebook-html/jacobi_method.html b/dev/notebook-html/jacobi_method.html index 128af40..7ebaed6 100644 --- a/dev/notebook-html/jacobi_method.html +++ b/dev/notebook-html/jacobi_method.html @@ -7477,7 +7477,7 @@ a.anchor-link { -
+
-
+
-
+ @@ -8116,7 +8116,7 @@ d) The inner, but not the outer
-
+
-
- -
- -
+
diff --git a/dev/notebooks/jacobi_method.ipynb b/dev/notebooks/jacobi_method.ipynb index 5da35db..5db4dff 100644 --- a/dev/notebooks/jacobi_method.ipynb +++ b/dev/notebooks/jacobi_method.ipynb @@ -35,7 +35,7 @@ }, { "cell_type": "markdown", - "id": "4b9d1d46", + "id": "48fd29d9", "metadata": {}, "source": [ "
\n", @@ -319,7 +319,7 @@ } }, "cell_type": "markdown", - "id": "6dfedc09", + "id": "8e156e29", "metadata": {}, "source": [ "
\n", @@ -329,7 +329,7 @@ }, { "cell_type": "markdown", - "id": "cc412ea0", + "id": "513f1f7e", "metadata": {}, "source": [ "### Efficiency\n", @@ -495,7 +495,9 @@ "id": "f6ea16f5", "metadata": {}, "source": [ - "### 1D block partition\n" + "### 1D block partition\n", + "\n", + "The following figure shows the portion of vector `u_new` is updated at each iteration by a particular process (CPU 3) left picture, and which entries of `u` are needed to update this data, right picture. We use analogous figures for the other partitions below.\n" ] }, { @@ -609,7 +611,7 @@ }, { "cell_type": "markdown", - "id": "6838b947", + "id": "f6b54b7b", "metadata": {}, "source": [ "## Implementation\n", @@ -983,26 +985,6 @@ "end" ] }, - { - "cell_type": "markdown", - "id": "ebb650d0", - "metadata": {}, - "source": [ - "### Exercise 2\n", - "\n", - "Compute the complexity of the communication and computation of the three data partition strategies (1d block partition, 2d block partition, and 2d cyclic partition) when computing a single iteration of the Jacobi method in 2D. Assume that the grid is of size $N \\times N$ and the number of processes $P$ is a perfect square number, i.e. $\\sqrt{P}$ is an integer. Hint: For the complexity analysis, you can ignore the effect of the boundary conditions.\n" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "id": "7b3d7cb3", - "metadata": {}, - "outputs": [], - "source": [ - "# TODO" - ] - }, { "cell_type": "markdown", "id": "6d3430ad", diff --git a/dev/notebooks/jacobi_method/index.html b/dev/notebooks/jacobi_method/index.html index 9ce6087..3dfc02b 100644 --- a/dev/notebooks/jacobi_method/index.html +++ b/dev/notebooks/jacobi_method/index.html @@ -18,4 +18,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); -
+ diff --git a/dev/notebooks/julia_async/index.html b/dev/notebooks/julia_async/index.html index 3b3921f..7a08bfa 100644 --- a/dev/notebooks/julia_async/index.html +++ b/dev/notebooks/julia_async/index.html @@ -18,4 +18,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/notebooks/julia_basics/index.html b/dev/notebooks/julia_basics/index.html index 290dcef..2e6da44 100644 --- a/dev/notebooks/julia_basics/index.html +++ b/dev/notebooks/julia_basics/index.html @@ -18,4 +18,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/notebooks/julia_distributed/index.html b/dev/notebooks/julia_distributed/index.html index c3629a9..768af25 100644 --- a/dev/notebooks/julia_distributed/index.html +++ b/dev/notebooks/julia_distributed/index.html @@ -18,4 +18,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/notebooks/julia_intro/index.html b/dev/notebooks/julia_intro/index.html index 6034c3b..37bd26e 100644 --- a/dev/notebooks/julia_intro/index.html +++ b/dev/notebooks/julia_intro/index.html @@ -18,4 +18,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/notebooks/julia_jacobi/index.html b/dev/notebooks/julia_jacobi/index.html index 19637a6..33b08c1 100644 --- a/dev/notebooks/julia_jacobi/index.html +++ b/dev/notebooks/julia_jacobi/index.html @@ -18,4 +18,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/notebooks/julia_tutorial/index.html b/dev/notebooks/julia_tutorial/index.html index ea61008..b8ceaa8 100644 --- a/dev/notebooks/julia_tutorial/index.html +++ b/dev/notebooks/julia_tutorial/index.html @@ -18,4 +18,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/notebooks/matrix_matrix/index.html b/dev/notebooks/matrix_matrix/index.html index 66bc571..a91cf6f 100644 --- a/dev/notebooks/matrix_matrix/index.html +++ b/dev/notebooks/matrix_matrix/index.html @@ -18,4 +18,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/notebooks/mpi_tutorial/index.html b/dev/notebooks/mpi_tutorial/index.html index cfcadbc..83e4cb8 100644 --- a/dev/notebooks/mpi_tutorial/index.html +++ b/dev/notebooks/mpi_tutorial/index.html @@ -18,4 +18,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/notebooks/notebook-hello/index.html b/dev/notebooks/notebook-hello/index.html index a3d69fa..fa223cc 100644 --- a/dev/notebooks/notebook-hello/index.html +++ b/dev/notebooks/notebook-hello/index.html @@ -18,4 +18,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/notebooks/solutions/index.html b/dev/notebooks/solutions/index.html index 1242ef4..5442e95 100644 --- a/dev/notebooks/solutions/index.html +++ b/dev/notebooks/solutions/index.html @@ -18,4 +18,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/notebooks/tsp/index.html b/dev/notebooks/tsp/index.html index 64e2966..cea8743 100644 --- a/dev/notebooks/tsp/index.html +++ b/dev/notebooks/tsp/index.html @@ -18,4 +18,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/search/index.html b/dev/search/index.html index 1f40b27..31830fd 100644 --- a/dev/search/index.html +++ b/dev/search/index.html @@ -1,2 +1,2 @@ -Search · XM_40017

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    +Search · XM_40017

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