From f4d810b431a4cc132a64cd8a487885869b55bb8e Mon Sep 17 00:00:00 2001 From: "Documenter.jl" Date: Tue, 24 Sep 2024 08:11:06 +0000 Subject: [PATCH] build based on 42003ed --- dev/.documenter-siteinfo.json | 2 +- dev/LEQ/index.html | 2 +- dev/asp/index.html | 2 +- dev/getting_started_with_julia/index.html | 2 +- dev/index.html | 2 +- dev/jacobi_2D/index.html | 2 +- dev/jacobi_method.ipynb | 4 ++-- dev/jacobi_method/index.html | 2 +- dev/jacobi_method_src/index.html | 4 ++-- dev/julia_async/index.html | 2 +- dev/julia_basics/index.html | 2 +- dev/julia_distributed/index.html | 2 +- dev/julia_intro/index.html | 2 +- dev/julia_jacobi/index.html | 2 +- dev/julia_mpi/index.html | 2 +- dev/julia_tutorial/index.html | 2 +- dev/matrix_matrix/index.html | 2 +- dev/mpi_collectives/index.html | 2 +- dev/mpi_tutorial/index.html | 2 +- dev/notebook-hello/index.html | 2 +- dev/pdes/index.html | 2 +- dev/solutions/index.html | 2 +- dev/solutions_for_all_notebooks/index.html | 2 +- dev/tsp/index.html | 2 +- 24 files changed, 26 insertions(+), 26 deletions(-) diff --git a/dev/.documenter-siteinfo.json b/dev/.documenter-siteinfo.json index 20ec1f5..bd83098 100644 --- a/dev/.documenter-siteinfo.json +++ b/dev/.documenter-siteinfo.json @@ -1 +1 @@ -{"documenter":{"julia_version":"1.10.5","generation_timestamp":"2024-09-23T14:37:03","documenter_version":"1.7.0"}} \ No newline at end of file +{"documenter":{"julia_version":"1.10.5","generation_timestamp":"2024-09-24T08:10:57","documenter_version":"1.7.0"}} \ No newline at end of file diff --git a/dev/LEQ/index.html b/dev/LEQ/index.html index d73836a..fb61ab8 100644 --- a/dev/LEQ/index.html +++ b/dev/LEQ/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/asp/index.html b/dev/asp/index.html index 9bf57ab..5b73abc 100644 --- a/dev/asp/index.html +++ b/dev/asp/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/getting_started_with_julia/index.html b/dev/getting_started_with_julia/index.html index 1071a5e..e5b83ed 100644 --- a/dev/getting_started_with_julia/index.html +++ b/dev/getting_started_with_julia/index.html @@ -15,4 +15,4 @@ DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"

Copy the contents of previous code block into a file called Project.toml and place it in an empty folder named newproject. It is important that the file is named Project.toml. You can create a new folder from the REPL with

julia> mkdir("newproject")

To install all the packages registered in this file you need to activate the folder containing your Project.toml file

(@v1.10) pkg> activate newproject

and then instantiating it

(newproject) pkg> instantiate

The instantiate command will download and install all listed packages and their dependencies in just one click.

Getting help in package mode

You can get help about a particular package operator by writing help in front of it

(@v1.10) pkg> help activate

You can get an overview of all package commands by typing help alone

(@v1.10) pkg> help

Package operations in Julia code

In some situations it is required to use package commands in Julia code, e.g., to automatize installation and deployment of Julia applications. This can be done using the Pkg package. For instance

julia> using Pkg
 julia> Pkg.status()

is equivalent to calling status in package mode.

(@v1.10) pkg> status

Creating you own package

In many situations, it is useful to create your own package, for instance, when working with a large code base, when you want to reduce compilation latency using Revise.jl, or if you want to eventually register your package and share it with others.

The simplest way of generating a package (called MyPackage) is as follows. Open Julia, go to package mode, and type

(@v1.10) pkg> generate MyPackage

This will crate a minimal package consisting of a new folder MyPackage with two files:

Tip

This approach only generates a very minimal package. To create a more sophisticated package skeleton (including unit testing, code coverage, readme file, licence, etc.) use PkgTemplates.jl or BestieTemplate.jl. The later one is developed in Amsterdam at the Netherlands eScience Center.

You can add dependencies to the package by activating the MyPackage folder in package mode and adding new dependencies as always:

(@v1.10) pkg> activate MyPackage
 (MyPackage) pkg> add MPI

This will add MPI to your package dependencies.

Using your own package

To use your package you first need to add it to a package environment of your choice. This is done by changing to package mode and typing develop followed by the path to the folder containing the package. For instance:

(@v1.10) pkg> develop MyPackage
Note

You do not need to "develop" your package if you activated the package folder MyPackage.

Now, we can go back to standard Julia mode and use it as any other package:

using MyPackage
-MyPackage.greet()

Here, we just called the example function defined in MyPackage/src/MyPackage.jl.

Conclusion

We have learned the basics of how to work with Julia, including how to run serial and parallel code, and how to manage, create, and use Julia packages. This knowledge will allow you to follow the course effectively! If you want to further dig into the topics we have covered here, you can take a look at the following links:

+MyPackage.greet()

Here, we just called the example function defined in MyPackage/src/MyPackage.jl.

Conclusion

We have learned the basics of how to work with Julia, including how to run serial and parallel code, and how to manage, create, and use Julia packages. This knowledge will allow you to follow the course effectively! If you want to further dig into the topics we have covered here, you can take a look at the following links:

diff --git a/dev/index.html b/dev/index.html index 1c78a92..870c39c 100644 --- a/dev/index.html +++ b/dev/index.html @@ -2,4 +2,4 @@ Home · XM_40017

Programming Large-Scale Parallel Systems (XM_40017)

Welcome to the interactive lecture notes of the Programming Large-Scale Parallel Systems course at VU Amsterdam!

What

This page contains part of the course material of the Programming Large-Scale Parallel Systems course at VU Amsterdam. We provide several lecture notes in jupyter notebook format, which will help you to learn how to design, analyze, and program parallel algorithms on multi-node computing systems. Further information about the course is found in the study guide (click here) and our Canvas page (for registered students).

Note

Material will be added incrementally to the website as the course advances.

Warning

This page will eventually contain only a part of the course material. The rest will be available on Canvas. In particular, the material in this public webpage does not fully cover all topics in the final exam.

How to use this page

You have two main ways of studying the notebooks:

  • Download the notebooks and run them locally on your computer (recommended). At each notebook page you will find a green box with links to download the notebook.
  • You also have the static version of the notebooks displayed in this webpage for quick reference.

How to run the notebooks locally

To run a notebook locally follow these steps:

  • Install Julia (if not done already). More information in Getting started.
  • Download the notebook.
  • Launch Julia. More information in Getting started.
  • Execute these commands in the Julia command line:
julia> using Pkg
 julia> Pkg.add("IJulia")
 julia> using IJulia
-julia> notebook()
  • These commands will open a jupyter in your web browser. Navigate in jupyter to the notebook file you have downloaded and open it.

Authors

This material is created by Francesc Verdugo with the help of Gelieza Kötterheinrich. Part of the notebooks are based on the course slides by Henri Bal.

License

All material on this page that is original to this course may be used under a CC BY 4.0 license.

Acknowledgment

This page was created with the support of the Faculty of Science of Vrije Universiteit Amsterdam in the framework of the project "Interactive lecture notes and exercises for the Programming Large-Scale Parallel Systems course" funded by the "Innovation budget BETA 2023 Studievoorschotmiddelen (SVM) towards Activated Blended Learning".

+julia> notebook()

Authors

This material is created by Francesc Verdugo with the help of Gelieza Kötterheinrich. Part of the notebooks are based on the course slides by Henri Bal.

License

All material on this page that is original to this course may be used under a CC BY 4.0 license.

Acknowledgment

This page was created with the support of the Faculty of Science of Vrije Universiteit Amsterdam in the framework of the project "Interactive lecture notes and exercises for the Programming Large-Scale Parallel Systems course" funded by the "Innovation budget BETA 2023 Studievoorschotmiddelen (SVM) towards Activated Blended Learning".

diff --git a/dev/jacobi_2D/index.html b/dev/jacobi_2D/index.html index 1fb6f3b..0d8863b 100644 --- a/dev/jacobi_2D/index.html +++ b/dev/jacobi_2D/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/jacobi_method.ipynb b/dev/jacobi_method.ipynb index aebbc9e..598079d 100644 --- a/dev/jacobi_method.ipynb +++ b/dev/jacobi_method.ipynb @@ -1416,8 +1416,8 @@ "```\n", "\n", " a) It is correct.\n", - " c) It is incorrect, but it might provide the right result depending on the MPI implementation.\n", - " b) It is incorrect, and it is guaranteed that it will result in a dead lock.\n", + " b) It is incorrect, but it might provide the right result depending on the MPI implementation.\n", + " c) It is incorrect, and it is guaranteed that it will result in a dead lock.\n", " d) This implementation does not work when distributing over just a single MPI rank.\n" ] }, diff --git a/dev/jacobi_method/index.html b/dev/jacobi_method/index.html index 0715876..1815edf 100644 --- a/dev/jacobi_method/index.html +++ b/dev/jacobi_method/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/jacobi_method_src/index.html b/dev/jacobi_method_src/index.html index 8e61d7d..6beca03 100644 --- a/dev/jacobi_method_src/index.html +++ b/dev/jacobi_method_src/index.html @@ -9121,8 +9121,8 @@ d) Loop over i only end 
a) It is correct.
-c) It is incorrect, but it might provide the right result depending on the MPI implementation.
-b) It is incorrect, and it is guaranteed that it will result in a dead lock.
+b) It is incorrect, but it might provide the right result depending on the MPI implementation.
+c) It is incorrect, and it is guaranteed that it will result in a dead lock.
 d) This implementation does not work when distributing over just a single MPI rank.
diff --git a/dev/julia_async/index.html b/dev/julia_async/index.html index d9cc952..cb15088 100644 --- a/dev/julia_async/index.html +++ b/dev/julia_async/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/julia_basics/index.html b/dev/julia_basics/index.html index 2fec932..abab5c5 100644 --- a/dev/julia_basics/index.html +++ b/dev/julia_basics/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/julia_distributed/index.html b/dev/julia_distributed/index.html index 7bd80cc..42ea03f 100644 --- a/dev/julia_distributed/index.html +++ b/dev/julia_distributed/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/julia_intro/index.html b/dev/julia_intro/index.html index cd59205..f6dc44f 100644 --- a/dev/julia_intro/index.html +++ b/dev/julia_intro/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/julia_jacobi/index.html b/dev/julia_jacobi/index.html index 30d593d..5f702c5 100644 --- a/dev/julia_jacobi/index.html +++ b/dev/julia_jacobi/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/julia_mpi/index.html b/dev/julia_mpi/index.html index 9c2370b..0a0f531 100644 --- a/dev/julia_mpi/index.html +++ b/dev/julia_mpi/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/julia_tutorial/index.html b/dev/julia_tutorial/index.html index 4ce99ec..02e6bb4 100644 --- a/dev/julia_tutorial/index.html +++ b/dev/julia_tutorial/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/matrix_matrix/index.html b/dev/matrix_matrix/index.html index e1a3ba8..2c0c8f7 100644 --- a/dev/matrix_matrix/index.html +++ b/dev/matrix_matrix/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/mpi_collectives/index.html b/dev/mpi_collectives/index.html index 5cc533c..2ef24c1 100644 --- a/dev/mpi_collectives/index.html +++ b/dev/mpi_collectives/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/mpi_tutorial/index.html b/dev/mpi_tutorial/index.html index 02f5ead..85e4d81 100644 --- a/dev/mpi_tutorial/index.html +++ b/dev/mpi_tutorial/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/notebook-hello/index.html b/dev/notebook-hello/index.html index 3ef87bd..b4fad97 100644 --- a/dev/notebook-hello/index.html +++ b/dev/notebook-hello/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/pdes/index.html b/dev/pdes/index.html index 83a161b..b840977 100644 --- a/dev/pdes/index.html +++ b/dev/pdes/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/solutions/index.html b/dev/solutions/index.html index b0778d8..e5f0161 100644 --- a/dev/solutions/index.html +++ b/dev/solutions/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - + diff --git a/dev/solutions_for_all_notebooks/index.html b/dev/solutions_for_all_notebooks/index.html index 8f07400..a28a9ab 100644 --- a/dev/solutions_for_all_notebooks/index.html +++ b/dev/solutions_for_all_notebooks/index.html @@ -306,4 +306,4 @@ end

« Traveling salesperson problem

Powered by Documenter.jl and the Julia Programming Language.

+end diff --git a/dev/tsp/index.html b/dev/tsp/index.html index 68f7a26..ce35122 100644 --- a/dev/tsp/index.html +++ b/dev/tsp/index.html @@ -14,4 +14,4 @@ var myIframe = document.getElementById("notebook"); iFrameResize({log:true}, myIframe); }); - +