Remove superfluous changelog and todos file

modified:   README.md
	modified:   bash/dot-bashrc
	modified:   git/dot-config/git/config
	new file:   helix/dot-config/helix/config.toml
	modified:   pet/dot-config/pet/snippet.toml
	renamed:    run.sh -> setup.sh

CHANGELOG

@@ -1,4 +0,0 @@
-# Changes
-
-## Monday June 16, 2025
-Started to reorganize the repo for use with GNU stow. I'm thinking why develop and maintain a system myself, when such a good tool for symlink farming, and thus also my use case of dotfiles management, already exists.

README.md

@@ -1,51 +1,38 @@
 # Dotfiles
 
-A collection of configuration files for various tools and applications I use, with an installation script to easily set them up on new systems.
+Personal dotfiles and more
 
 ## Installation
 
-### Clone the repository
+Install [GNU stow](https://gnu.org/software/stow/). 
+You **will** want a version >= 8. September 2024! See [here](https://cgit.git.savannah.gnu.org/cgit/stow.git/tree/NEWS). 
+This is so `dot-*` named files (or dirs) are handled correctly!
+
+See `run.sh`. Use it as taskfile to install stow.
+
+Then, to make sure that stow is correctly handling `dot-*` named dirs, run
 
 ```bash
-git clone git@github.com:sebaschi/dotfiles.git ~/.dotfiles
+stow --dotfiles --verbose stow
 ```
-{
+This installs the `dot-stowrc` and global ignore list. 
 
-### Install configurations
-
-The `dot-install` script can be used to install specific configurations or all of them at once:
-
-```bash
-# Install everything
-~/.dotfiles/dot-install all
-
-# Install specific configurations
-~/.dotfiles/dot-install git nvim tmux
-
-# Install only bash aliases
-~/.dotfiles/dot-install bash:aliases
+## Installing configs
+```sh
+stow <config-pkg-name>
 ```
-
-Run `~/.dotfiles/dot-install` without arguments to see all available options.
-
-## Testing
-
-A test script is included to verify the installation script works correctly:
-
-```bash
-~/.dotfiles/test-dot-install
+`<config-pkg-name>` is just one of the directories of this repo.
+To see what the effect would be without applying anything (dry-run):
+```sh
+stow -n <config-pkg-name>
 ```
 
-This runs the installation in an isolated environment to ensure all symlinks are correctly created.
-Nothing fancy, just creates mock home in `/tmp` and changes some envars used by the install script.
-The "Testing" amounts to check symlinks exist. This is mostly usefull once extended to detect config packages (just the directories containing an a config), to remind me to add a function for it in `dot-install`.
-
 ## Included Configurations
 
 * **Shells**: Bash, Fish, Zsh
 * **Terminal**: Tmux, Zellij, Ghostty
 * **Editors**: Vim, Neovim (with lazy.nvim)
-* **Tools**: Git, Starship prompt, Borg backup
+* **Tools**: Git, Starship prompt, Borg backup, Fossil (**TODO**)
 * **Utilities**: Rsync filters
 
 ## Tools Tools

TODO.md

@@ -1,2 +0,0 @@
-+ update readme
-+ rethink shell/bash standardlib

bash/dot-bash_logout

@@ -0,0 +1,7 @@
+# ~/.bash_logout: executed by bash(1) when login shell exits.
+
+# when leaving the console clear the screen to increase privacy
+
+if [ "$SHLVL" = 1 ]; then
+    [ -x /usr/bin/clear_console ] && /usr/bin/clear_console -q
+fi

bash/dot-bashrc

@@ -0,0 +1,161 @@
+# ~/.bashrc: executed by bash(1) for non-login shells.
+# see /usr/share/doc/bash/examples/startup-files (in the package bash-doc)
+# for examples
+
+# If not running interactively, don't do anything
+case $- in
+    *i*) ;;
+      *) return;;
+esac
+
+# don't put duplicate lines or lines starting with space in the history.
+# See bash(1) for more options
+HISTCONTROL=ignoreboth
+
+# append to the history file, don't overwrite it
+shopt -s histappend
+
+# for setting history length see HISTSIZE and HISTFILESIZE in bash(1)
+HISTSIZE=1000
+HISTFILESIZE=2000
+
+# check the window size after each command and, if necessary,
+# update the values of LINES and COLUMNS.
+shopt -s checkwinsize
+
+# If set, the pattern "**" used in a pathname expansion context will
+# match all files and zero or more directories and subdirectories.
+#shopt -s globstar
+
+# make less more friendly for non-text input files, see lesspipe(1)
+[ -x /usr/bin/lesspipe ] && eval "$(SHELL=/bin/sh lesspipe)"
+
+# set variable identifying the chroot you work in (used in the prompt below)
+if [ -z "${debian_chroot:-}" ] && [ -r /etc/debian_chroot ]; then
+    debian_chroot=$(cat /etc/debian_chroot)
+fi
+
+# set a fancy prompt (non-color, unless we know we "want" color)
+case "$TERM" in
+    xterm-color|*-256color) color_prompt=yes;;
+esac
+# uncomment for a colored prompt, if the terminal has the capability; turned
+# off by default to not distract the user: the focus in a terminal window
+# should be on the output of commands, not on the prompt
+#force_color_prompt=yes
+
+if [ -n "$force_color_prompt" ]; then
+    if [ -x /usr/bin/tput ] && tput setaf 1 >&/dev/null; then
+	# We have color support; assume it's compliant with Ecma-48
+	# (ISO/IEC-6429). (Lack of such support is extremely rare, and such
+	# a case would tend to support setf rather than setaf.)
+	color_prompt=yes
+    else
+	color_prompt=
+    fi
+fi
+
+if [ "$color_prompt" = yes ]; then
+    PS1='${debian_chroot:+($debian_chroot)}\[\033[01;32m\]\u@\h\[\033[00m\]:\[\033[01;34m\]\w\[\033[00m\]\$ '
+else
+    PS1='${debian_chroot:+($debian_chroot)}\u@\h:\w\$ '
+fi
+unset color_prompt force_color_prompt
+
+# If this is an xterm set the title to user@host:dir
+case "$TERM" in
+xterm*|rxvt*)
+    PS1="\[\e]0;${debian_chroot:+($debian_chroot)}\u@\h: \w\a\]$PS1"
+    ;;
+*)
+    ;;
+esac
+
+# enable color support of ls and also add handy aliases
+if [ -x /usr/bin/dircolors ]; then
+    test -r ~/.dircolors && eval "$(dircolors -b ~/.dircolors)" || eval "$(dircolors -b)"
+    alias ls='eza --color'
+    alias dir='dir --color'
+    alias vdir='vdir --color'
+
+    # using ugrep instead of grep
+    alias grep='ug -G --color'
+    alias fgrep='ug -F --color'
+    alias egrep='ug -E --color'
+fi
+
+# colored GCC warnings and errors
+export GCC_COLORS='error=01;31:warning=01;35:note=01;36:caret=01;32:locus=01:quote=01'
+
+# some more ls aliases
+alias ll='ls -alF'
+alias la='ls -A'
+alias l='ls -hF'
+
+# Add an "alert" alias for long running commands.  Use like so:
+#   sleep 10; alert
+alias alert='notify-send --urgency=low -i "$([ $? = 0 ] && echo terminal || echo error)" "$(history|tail -n1|sed -e '\''s/^\s*[0-9]\+\s*//;s/[;&|]\s*alert$//'\'')"'
+
+# Alias definitions.
+# You may want to put all your additions into a separate file like
+# ~/.bash_aliases, instead of adding them here directly.
+# See /usr/share/doc/bash-doc/examples in the bash-doc package.
+
+if [ -f ~/.bash_aliases ]; then
+    . ~/.bash_aliases
+fi
+
+# Source bash env list
+source $HOME/.local/share/bash/bash_env
+
+# Pet snippet manager
+# register previous command 
+function prev() {
+    PREV=$(echo $(history | tail -n2 | head -n1) | sed 's/[0-9]* //')
+    sh -c "pet new $(printf %q "$PREV")"
+}
+
+# TODO if [ -d ~/.bashrc.d ]; then
+
+# enable programmable completion features (you don't need to enable
+# this, if it's already enabled in /etc/bash.bashrc and /etc/profile
+# sources /etc/bash.bashrc).
+if ! shopt -oq posix; then
+  if [ -f /usr/share/bash-completion/bash_completion ]; then
+    . /usr/share/bash-completion/bash_completion
+  elif [ -f /etc/bash_completion ]; then
+    . /etc/bash_completion
+  fi
+fi
+. "$HOME/.cargo/env"
+
+
+# Starship init
+eval "$(starship init bash)"
+
+# Homebrew
+eval "$(/home/linuxbrew/.linuxbrew/bin/brew shellenv)"
+
+# Pagers
+#export PAGER="$(which moar)"
+# export MANPAGER="$PAGER"
+
+# Github CLI aliases
+alias ghce="gh copilot explain"
+alias ghcs="gh copilot suggest"
+
+# Util Aliases
+# broot does this now
+# alias fcd='cd "$(dirname "$(fzf)")"'
+alias st='systemctl-tui'
+alias task='./task.py'
+
+# BEGIN hcloud
+source <(hcloud completion bash)
+# END hcloud
+
+source /home/seb/.config/broot/launcher/bash/br
+
+[ -f "/home/seb/.ghcup/env" ] && . "/home/seb/.ghcup/env" # ghcup-env
+
+alias nodeman='ssh hwsec nodeman'

ghostty/dot-config/ghostty/config

@@ -7,7 +7,7 @@ window-width = 140
 window-height = 35
 window-save-state = always
 auto-update = download
-command = /home/linuxbrew/.linuxbrew/bin/nu
+# command = /home/linuxbrew/.linuxbrew/bin/nu
 keybind = ctrl+shift+l=goto_split:right
 keybind = ctrl+shift+h=goto_split:left
 keybind = ctrl+shift+j=goto_split:bottom

git/dot-config/git/config

@@ -1,10 +1,9 @@
 [user]
-    email = 74497638+sebaschi@users.noreply.github.com
 	name = Sebastian Lenzlinger
-[http]
-	sslVerify = false
-[filter "lfs"]
-	clean = git-lfs clean -- %f
-	smudge = git-lfs smudge -- %f
-	process = git-lfs filter-process
-	required = true
+	email = s.m.lenzlinger@student.vu.nl
+[init]
+	defaultBranch = devel
+[core]
+	editor = nvim
+[gpg "ssh"]
+	allowedSignersFile = /home/seb/.ssh/allowed_signers

git/dot-config/git/ignore

@@ -0,0 +1,17 @@
+.claude/
+.claude
+.claude/**
+Claude.md
+*.o
+*.log
+cache/
+logs/
+build/
+
+# Python stuff
+__pycache__/
+*.pyc
+
+
+# Environement/ 12 Factor
+.env

helix/dot-config/helix/config.toml

@@ -0,0 +1,5 @@
+theme = "yellowed"
+
+[editor.cursor-shape]
+insert = "bar"
+

pet/dot-config/pet/config.toml

@@ -0,0 +1,37 @@
+
+[GHEGist]
+  Public = false
+  access_token = ""
+  auto_sync = false
+  base_url = ""
+  file_name = ""
+  gist_id = ""
+  upload_url = ""
+
+[General]
+  Backend = "gist"
+  Cmd = []
+  Color = false
+  Column = 40
+  Editor = "sensible-editor"
+  Format = "[$description]: $command $tags"
+  SelectCmd = "fzf --ansi --layout=reverse --border --height=90% --pointer=* --cycle --prompt=Snippets:"
+  SnippetDirs = []
+  SnippetFile = "/home/seb/.config/pet/snippet.toml"
+  SortBy = ""
+
+[Gist]
+  Public = false
+  access_token = ""
+  auto_sync = false
+  file_name = "pet-snippet.toml"
+  gist_id = ""
+
+[GitLab]
+  ID = ""
+  Url = ""
+  Visibility = "private"
+  access_token = ""
+  auto_sync = false
+  file_name = "pet-snippet.toml"
+  skip_ssl = false

pet/dot-config/pet/notes.md

@@ -0,0 +1,5 @@
+# IMPORTANT
+The two `prev.{bash, zsh}` functions need to go into `.bashrc` or `.zshrc` respectively.
+The `pet-slect.*` need to be put in the rc EXACTLY AS IS!!!. Else the keys aren't rebound.
+Those files are taken from [this](https://github.com/knqyf263/pet) Readme. As such, 
+that repos license might apply!

pet/dot-config/pet/pre-select.bash

@@ -0,0 +1,6 @@
+function pet-select() {
+  BUFFER=$(pet search --query "$READLINE_LINE")
+  READLINE_LINE=$BUFFER
+  READLINE_POINT=${#BUFFER}
+}
+bind -x '"\C-x\C-r": pet-select'

pet/dot-config/pet/pre-select.zsh

@@ -0,0 +1,8 @@
+function pet-select() {
+  BUFFER=$(pet search --query "$LBUFFER")
+  CURSOR=$#BUFFER
+  zle redisplay
+}
+zle -N pet-select
+stty -ixon
+bindkey '^s' pet-select

pet/dot-config/pet/prev.bash

@@ -0,0 +1,4 @@
+function prev() {
+  PREV=$(echo `history | tail -n2 | head -n1` | sed 's/[0-9]* //')
+  sh -c "pet new `printf %q "$PREV"`"
+}

pet/dot-config/pet/prev.zsh

@@ -0,0 +1,4 @@
+function prev() {
+  PREV=$(fc -lrn | head -n 1)
+  sh -c "pet new `printf %q "$PREV"`"
+}

pet/dot-config/pet/snippet.toml

@@ -0,0 +1,12 @@
+
+[[Snippets]]
+  Description = "Get root shell while preserving environment variables."
+  Output = ""
+  Tag = ["superuser", "bash", "sh", "envvar"]
+  command = "sudo -E --shell"
+
+[[Snippets]]
+  Description = "Preprocess slabinfo header so that columns align correctly"
+  Output = ""
+  Tag = []
+  command = "sed 's/# //' /proc/slabinfo | column -t"

setup.sh

@@ -40,3 +40,6 @@ install_gnu_stow() {
 		install_stow_latest_from_source
 	fi
 }
+
+
+"@"

shellib/dot-local/lib/shellib/libseb.sh

@@ -0,0 +1,12 @@
+log() {
+  # Write msg to stderr.
+  # Taken from https://github.com/oils-for-unix/oils/blob/master/stdlib/osh/two.sh
+  echo "$@" >&2
+}
+
+die() {
+  # Write error msg with script name and exit with status 1.
+  # Taken from https://github.com/oils-for-unix/oils/blob/master/stdlib/osh/two.sh
+  log "$@: fatal $@"
+  exit 1
+}